Simultaneous Detection and Genotype Determination of Hsv 1 and 2 by Real-Time Pcr Using Melting Curve Analysis and a Unique Pair of Primers Publisher Pubmed



Paryan M¹ ; Mohammadiyeganeh S^{2, 3} ; Rezvan H⁴ ; Kia V⁶ ; Mansouri A² ; Samiee SM^{4, 5}
Source: Applied Immunohistochemistry and Molecular Morphology Published:2017

Abstract

Herpes simplex virus (HSV) is a human pathogen that causes different pathologic manifestations. Rapid and feasible detection and discrimination methods for HSV genotyping is a challenge in clinical laboratories, especially in children suffering from herpetic encephalitis. A quantitative real-time polymerase chain reaction (PCR)-based genotyping assay using SYBR Green I was established. We designed only 1 pair of primer for HSV 1 and 2, targeting thymidine kinase gene conserved region. HSV genotypes were determined by PCR using melting curve analysis with LightCycler ®. Different HSV genotypes were successfully detected in all clinical samples. The melting temperature for HSV 1 and 2 was 85.5±0.78°C and 89±0.53°C, respectively. These 2 genotypes were completely distinguished by means of the accurate melting assay. Importantly, detection was reliably performed within only 1 hour. The assay had no cross-reactivity across species, an excellent dynamic range from 10 to 10 6 copies per reaction, a good intra-assay and interassay reproducibility, and a detection limit of a single copy per reaction. Our homebrew designed and validated quantitative real-time PCR followed by a melting curve analysis provided a rapid and convenient screening test for differential identification of HSV genotypes 1 and 2. We recommend the large-scale application of this method for HSV 1 and 2 detection. Copyright © 2015 Wolters Kluwer Health, Inc. All rights reserved.