Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level

Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level Publisher Pubmed

Goya S¹ ; Ruis C² ; Neher RA³ ; Meijer A⁴ ; Aziz A⁵ ; Hinrichs AS⁶ ; Von Gottberg A^{7, 8} ; Roemer C³ ; Amoako DG⁹ ; Acuna D^{10, 11} ; Mcbroome J⁶ ; Otieno JR¹² ; Bhiman JN^{7, 8} ; Everatt J⁷ Show All Authors

Goya S¹
Ruis C²
Neher RA³
Meijer A⁴
Aziz A⁵
Hinrichs AS⁶
Von Gottberg A^{7, 8}
Roemer C³
Amoako DG⁹
Acuna D^{10, 11}
Mcbroome J⁶
Otieno JR¹²
Bhiman JN^{7, 8}
Everatt J⁷
Munozescalante JC¹³
Ramaekers K¹⁴
Duggan K¹⁵
Presser LD⁴
Urbanska L³
Venter M¹⁶
Wolter N^{7, 8}
Peret TCT¹⁷
Salimi V¹⁸
Potdar V¹⁹
Borges V²⁰
Viegas M^{10, 11}

Show Affiliations

1. University of Washington, Seattle, WA, United States
2. University of Cambridge, Cambridge, United Kingdom
3. University of Basel and SIB, Basel, Switzerland
4. National Institute for Public Health and the Environment, Bilthoven, Netherlands
5. World Health Organization Collaborating Centre for Reference and Research on Influenza, Melbourne, VIC, Australia
6. University of California Santa Cruz, Santa Cruz, CA, United States
7. National Institute for Communicable Diseases, The National Health Laboratory Service, Johannesburg, South Africa
8. University of Witwatersrand, Johannesburg, South Africa
9. University of KwaZulu-Natal, Durban, South Africa
10. Universidad Nacional de La Plata, Buenos Aires, Argentina
11. National Scientific and Technical Research Council, Buenos Aires, Argentina
12. Theiagen Genomics, Highlands Ranch, CO, United States
13. Autonomous University of San Luis Potosi, San Luis Potosi, Mexico
14. Rega Institute for Medical Research, Leuven, Belgium
15. University of Edinburgh, Edinburgh, United Kingdom
16. University of Pretoria, Pretoria, South Africa
17. University of Texas Medical Branch, Galveston, TX, United States
18. Tehran University of Medical Sciences, Tehran, Iran
19. ICMR National Institute of Virology, Pune, India
20. National Institute of Health Doutor Ricardo Jorge, Lisbon, Portugal

Source: Emerging Infectious Diseases Published:2024

Abstract

A globally implemented unified phylogenetic classification for human respiratory syncytial virus (HRSV) below the subgroup level remains elusive. We formulated global consensus of HRSV classification on the basis of the challenges and limitations of our previous proposals and the future of genomic surveillance. From a high-quality curated dataset of 1,480 HRSV-A and 1,385 HRSV-B genomes submitted to GenBank and GISAID (https://www. gisaid.org) public sequence databases through March 2023, we categorized HRSV-A/B sequences into lineages based on phylogenetic clades and amino acid markers. We defined 24 lineages within HRSV-A and 16 within HRSV-B and provided guidelines for defining prospective lineages. Our classification demonstrated robustness in its applicability to both complete and partial genomes. We envision that this unified HRSV classification proposal will strengthen HRSV molecular epidemiology on a global scale. © 2024 Centers for Disease Control and Prevention (CDC). All rights reserved.

2. Respiratory Syncytial Virus Infection: Why Does Disease Severity Vary Among Individuals?, Expert Review of Respiratory Medicine (2020)

3. Molecular Characterization of the Glycoprotein and Fusion Protein in Human Respiratory Syncytial Virus Subgroup A: Emergence of On-1 Genotype in Iran, Infection# Genetics and Evolution (2019)

4. Determination of Genetic Characterization and Circulation Pattern of Respiratory Syncytial Virus (Rsv) in Children With a Respiratory Infection, Tehran, Iran, During 2018-2019, Virus Research (2021)

5. Genetic Characterization of G Protein in Respiratory Syncytial Virus On-1 Genotype in Tehran, Future Virology (2020)

6. Proposal for Human Respiratory Syncytial Virus Nomenclature Below the Species Level, Emerging Infectious Diseases (2021)

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Vahid Salimi (6)

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Style	Citing Format
MLA	Goya S, et al.. "Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level." Emerging Infectious Diseases, vol. 30, no. 8, 2024, pp. 1631-1641.
APA	Goya S, Ruis C, Neher RA, Meijer A, Aziz A, Hinrichs AS, Von Gottberg A, Roemer C, Amoako DG, Acuna D, Mcbroome J, Otieno JR, Bhiman JN, Everatt J, Munozescalante JC, Ramaekers K, Duggan K, Presser LD, Urbanska L, ... Viegas M (2024). Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level. Emerging Infectious Diseases, 30(8), 1631-1641.
Chicago	Goya S, Ruis C, Neher RA, Meijer A, Aziz A, Hinrichs AS, Von Gottberg A, et al.. "Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level." Emerging Infectious Diseases 30, no. 8 (2024): 1631-1641.
Harvard	Goya S et al. (2024) 'Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level', Emerging Infectious Diseases, 30(8), pp. 1631-1641.
Vancouver	Goya S, Ruis C, Neher RA, Meijer A, Aziz A, Hinrichs AS, et al.. Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level. Emerging Infectious Diseases. 2024;30(8):1631-1641.
BibTex	@article{ author = {Goya S and Ruis C and Neher RA and Meijer A and Aziz A and Hinrichs AS and Von Gottberg A and Roemer C and Amoako DG and Acuna D and Mcbroome J and Otieno JR and Bhiman JN and Everatt J and Munozescalante JC and Ramaekers K and Duggan K and Presser LD and Urbanska L and Venter M and Wolter N and Peret TCT and Salimi V and Potdar V and Borges V and Viegas M}, title = {Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level}, journal = {Emerging Infectious Diseases}, volume = {30}, number = {8}, pages = {1631-1641}, year = {2024} }
RIS	TY - JOUR AU - Goya S AU - Ruis C AU - Neher RA AU - Meijer A AU - Aziz A AU - Hinrichs AS AU - Von Gottberg A AU - Roemer C AU - Amoako DG AU - Acuna D AU - Mcbroome J AU - Otieno JR AU - Bhiman JN AU - Everatt J AU - Munozescalante JC AU - Ramaekers K AU - Duggan K AU - Presser LD AU - Urbanska L AU - Venter M AU - Wolter N AU - Peret TCT AU - Salimi V AU - Potdar V AU - Borges V AU - Viegas M TI - Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level JO - Emerging Infectious Diseases VL - 30 IS - 8 SP - 1631 EP - 1641 PY - 2024 ER -

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