Cross-Ancestral Gwas Identifies 29 Variants Across Head and Neck Cancer Subsites

Cross-Ancestral Gwas Identifies 29 Variants Across Head and Neck Cancer Subsites Publisher Pubmed

Ebrahimi E ; Sangphukieo A ; Park HA ; Gaborieau V ; Ferreiroiglesias A ; Diergaarde B ; Ahrens W ; Alemany L ; Arantes LMRB ; Betka J ; Bratman SV ; Canova C ; Conlon MSC ; Conway DI Show All Authors

Ebrahimi E
Sangphukieo A
Park HA
Gaborieau V
Ferreiroiglesias A
Diergaarde B
Ahrens W
Alemany L
Arantes LMRB
Betka J
Bratman SV
Canova C
Conlon MSC
Conway DI
Cuello M
Curado MP
De Carvalho AC
De Oliviera JC
Gormley M
Hadji M
Hargreaves S
Healy CM
Holcatova I
Hung RJ
Kowalski LP
Lagiou P
Lagiou A
Liu G
Macfarlane GJ
Olshan AF
Perdomo Velasquez S
Pinto LFR
De Podesta JRV
Polesel J
Pring M
Rashidian H
Gama RR
Richiardi L
Robinson M
Rodriguez Urrego PA
Santi SA
Saunders DP
Soareslima SC
Timpson N
Vilensky M
Von Zeidler SV
Waterboer T
Zendehdel K
Znaor A
Brennan P
Wright S
Whitmarsh A
Valenzuela A
Ucross G
Tous S
Torres O
Thomas S
Stura A
De Oliveira JS
Sosa C
Sorroche BP
Smart S
Siefer O
Sharma SJ
Serrano R
Sena A
Segovia J
Scapultamponeto C
Santivanez JJ
Saintigny P
Ali TS
Roux PE
Ross A
Rodriguez MI
Rodriguez I
Rodilla F
Riva G
Ricardi U
Renard H
Reis RM
Rego JNI
Rasul S
Ramieri G
Prager KM
Prado CP
Poveda A
Popovic M
Pomata A
Pervez S
Perol O
Pereira DM
Pecorari G
Casabona SP
Paterson C
Palau M
Ostellino O
Ospina V
Osorio M
Ortiz J
Ortiz H
De Oliveira JC
Oliva M
Neves AB
Ness A
Munoz A
Cortes FM
Montealegrepaez AL
Mongelos P
Moccia C
Mineiro MS
Michels B
Meza L
Mendoza L
Mendonca EF
Mena C
Mcmahon AD
Mccaul J
Marzban M
De Abreu PM
Manos M
Rocha RM
Zorzaneli WM
Gonzalez IL
Dias FL
Lenzi J
Legal E
Klumann JP
Kana M
Johannsen J
Siddiqui MI
Iorio GC
Insfran M
Hurley K
De Sa Santos MH
Hayes DN
Hakim JA
Guasch A
Co ACG
Grega M
Santanna JG
De Aquino Goulart MA
Giglio R
Gholipour M
Garzinodemo P
Gangemi M
Villefort RF
Figueira FF
Fiano V
Fervers B
Fernandes GA
Escallon A
Durant LC
De Souza ED
Dias TC
Cuffini C
Creaney G
Costa I
Clavero O
Chundriger Q
Chopard P
Chiusa L
Carvalho AL
Carvalho RS
Cantor E
Cabanas ML
Burtica C
Brentisci C
Brenner N
Brenes J
Bouvard L
Botta MG
Zimmermann JB
Rodrigues NB
Bernal P
Berenstein B
Beraldi B
Daniel CB
Baldionelorza AM
Avondet L
Avello Y
Arguello L
Arantes PE
Anwar N
Pavon MA
Alwaheidi SF
Alibhai S
Agudo A
Adam R
Timpson N
Pinto LF
Mckay J
Virani S
Dudding T

Source: Nature Communications Published:2025

Abstract

Head and neck squamous cell carcinoma (HNSCC) includes diverse cancers arising in the oral cavity, oropharynx, and larynx, with the main risk factors being environmental exposures such as tobacco, alcohol, and human papillomavirus (HPV) infection. The genetic factors contributing to susceptibility across different populations and tumour subsites remain incompletely understood. Here we show, through a genome-wide association and fine mapping study of over 19,000 HNSCC cases and 38,000 controls from multiple ancestries, 18 genetic risk variants and 11 signals from fine mapping of the human leukocyte antigen (HLA) region, all previously unreported. rs78378222, a regulatory variant for TP53 is associated with a 40% reduction in overall HNSCC risk. We also identify gene-environment interactions, with BRCA2 and ADH1B variants showing effects modified by smoking and alcohol use. Subsite-specific analysis of the HLA region reveals distinct immune-related associations across HPV-positive and HPV-negative tumours. These findings refine the genetic architecture of HNSCC and highlight mechanisms linking inherited variation, immunity, and environmental exposures. © 2025 Elsevier B.V., All rights reserved.

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Style	Citing Format
MLA	Ebrahimi E, et al.. "Cross-Ancestral Gwas Identifies 29 Variants Across Head and Neck Cancer Subsites." Nature Communications, vol. 16, no. 1, 2025, pp. -.
APA	Ebrahimi E, Sangphukieo A, Park HA, Gaborieau V, Ferreiroiglesias A, Diergaarde B, Ahrens W, Alemany L, Arantes LMRB, Betka J, Bratman SV, Canova C, Conlon MSC, Conway DI, Cuello M, Curado MP, De Carvalho AC, De Oliviera JC, Gormley M, ... Dudding T (2025). Cross-Ancestral Gwas Identifies 29 Variants Across Head and Neck Cancer Subsites. Nature Communications, 16(1), -.
Chicago	Ebrahimi E, Sangphukieo A, Park HA, Gaborieau V, Ferreiroiglesias A, Diergaarde B, Ahrens W, et al.. "Cross-Ancestral Gwas Identifies 29 Variants Across Head and Neck Cancer Subsites." Nature Communications 16, no. 1 (2025): -.
Harvard	Ebrahimi E et al. (2025) 'Cross-Ancestral Gwas Identifies 29 Variants Across Head and Neck Cancer Subsites', Nature Communications, 16(1), pp. -.
Vancouver	Ebrahimi E, Sangphukieo A, Park HA, Gaborieau V, Ferreiroiglesias A, Diergaarde B, et al.. Cross-Ancestral Gwas Identifies 29 Variants Across Head and Neck Cancer Subsites. Nature Communications. 2025;16(1):-.
BibTex	@article{ author = {Ebrahimi E and Sangphukieo A and Park HA and Gaborieau V and Ferreiroiglesias A and Diergaarde B and Ahrens W and Alemany L and Arantes LMRB and Betka J and Bratman SV and Canova C and Conlon MSC and Conway DI and Cuello M and Curado MP and De Carvalho AC and De Oliviera JC and Gormley M and Hadji M and Hargreaves S and Healy CM and Holcatova I and Hung RJ and Kowalski LP and Lagiou P and Lagiou A and Liu G and Macfarlane GJ and Olshan AF and Perdomo Velasquez S and Pinto LFR and De Podesta JRV and Polesel J and Pring M and Rashidian H and Gama RR and Richiardi L and Robinson M and Rodriguez Urrego PA and Santi SA and Saunders DP and Soareslima SC and Timpson N and Vilensky M and Von Zeidler SV and Waterboer T and Zendehdel K and Znaor A and Brennan P and Wright S and Whitmarsh A and Valenzuela A and Ucross G and Tous S and Torres O and Thomas S and Stura A and De Oliveira JS and Sosa C and Sorroche BP and Smart S and Siefer O and Sharma SJ and Serrano R and Sena A and Segovia J and Scapultamponeto C and Santivanez JJ and Saintigny P and Ali TS and Roux PE and Ross A and Rodriguez MI and Rodriguez I and Rodilla F and Riva G and Ricardi U and Renard H and Reis RM and Rego JNI and Rasul S and Ramieri G and Prager KM and Prado CP and Poveda A and Popovic M and Pomata A and Pervez S and Perol O and Pereira DM and Pecorari G and Casabona SP and Paterson C and Palau M and Ostellino O and Ospina V and Osorio M and Ortiz J and Ortiz H and De Oliveira JC and Oliva M and Neves AB and Ness A and Munoz A and Cortes FM and Montealegrepaez AL and Mongelos P and Moccia C and Mineiro MS and Michels B and Meza L and Mendoza L and Mendonca EF and Mena C and Mcmahon AD and Mccaul J and Marzban M and De Abreu PM and Manos M and Rocha RM and Zorzaneli WM and Gonzalez IL and Dias FL and Lenzi J and Legal E and Klumann JP and Kana M and Johannsen J and Siddiqui MI and Iorio GC and Insfran M and Hurley K and De Sa Santos MH and Hayes DN and Hakim JA and Guasch A and Co ACG and Grega M and Santanna JG and De Aquino Goulart MA and Giglio R and Gholipour M and Garzinodemo P and Gangemi M and Villefort RF and Figueira FF and Fiano V and Fervers B and Fernandes GA and Escallon A and Durant LC and De Souza ED and Dias TC and Cuffini C and Creaney G and Costa I and Clavero O and Chundriger Q and Chopard P and Chiusa L and Carvalho AL and Carvalho RS and Cantor E and Cabanas ML and Burtica C and Brentisci C and Brenner N and Brenes J and Bouvard L and Botta MG and Zimmermann JB and Rodrigues NB and Bernal P and Berenstein B and Beraldi B and Daniel CB and Baldionelorza AM and Avondet L and Avello Y and Arguello L and Arantes PE and Anwar N and Pavon MA and Alwaheidi SF and Alibhai S and Agudo A and Adam R and Timpson N and Pinto LF and Mckay J and Virani S and Dudding T}, title = {Cross-Ancestral Gwas Identifies 29 Variants Across Head and Neck Cancer Subsites}, journal = {Nature Communications}, volume = {16}, number = {1}, pages = {-}, year = {2025} }
RIS	TY - JOUR AU - Ebrahimi E AU - Sangphukieo A AU - Park HA AU - Gaborieau V AU - Ferreiroiglesias A AU - Diergaarde B AU - Ahrens W AU - Alemany L AU - Arantes LMRB AU - Betka J AU - Bratman SV AU - Canova C AU - Conlon MSC AU - Conway DI AU - Cuello M AU - Curado MP AU - De Carvalho AC AU - De Oliviera JC AU - Gormley M AU - Hadji M AU - Hargreaves S AU - Healy CM AU - Holcatova I AU - Hung RJ AU - Kowalski LP AU - Lagiou P AU - Lagiou A AU - Liu G AU - Macfarlane GJ AU - Olshan AF AU - Perdomo Velasquez S AU - Pinto LFR AU - De Podesta JRV AU - Polesel J AU - Pring M AU - Rashidian H AU - Gama RR AU - Richiardi L AU - Robinson M AU - Rodriguez Urrego PA AU - Santi SA AU - Saunders DP AU - Soareslima SC AU - Timpson N AU - Vilensky M AU - Von Zeidler SV AU - Waterboer T AU - Zendehdel K AU - Znaor A AU - Brennan P AU - Wright S AU - Whitmarsh A AU - Valenzuela A AU - Ucross G AU - Tous S AU - Torres O AU - Thomas S AU - Stura A AU - De Oliveira JS AU - Sosa C AU - Sorroche BP AU - Smart S AU - Siefer O AU - Sharma SJ AU - Serrano R AU - Sena A AU - Segovia J AU - Scapultamponeto C AU - Santivanez JJ AU - Saintigny P AU - Ali TS AU - Roux PE AU - Ross A AU - Rodriguez MI AU - Rodriguez I AU - Rodilla F AU - Riva G AU - Ricardi U AU - Renard H AU - Reis RM AU - Rego JNI AU - Rasul S AU - Ramieri G AU - Prager KM AU - Prado CP AU - Poveda A AU - Popovic M AU - Pomata A AU - Pervez S AU - Perol O AU - Pereira DM AU - Pecorari G AU - Casabona SP AU - Paterson C AU - Palau M AU - Ostellino O AU - Ospina V AU - Osorio M AU - Ortiz J AU - Ortiz H AU - De Oliveira JC AU - Oliva M AU - Neves AB AU - Ness A AU - Munoz A AU - Cortes FM AU - Montealegrepaez AL AU - Mongelos P AU - Moccia C AU - Mineiro MS AU - Michels B AU - Meza L AU - Mendoza L AU - Mendonca EF AU - Mena C AU - Mcmahon AD AU - Mccaul J AU - Marzban M AU - De Abreu PM AU - Manos M AU - Rocha RM AU - Zorzaneli WM AU - Gonzalez IL AU - Dias FL AU - Lenzi J AU - Legal E AU - Klumann JP AU - Kana M AU - Johannsen J AU - Siddiqui MI AU - Iorio GC AU - Insfran M AU - Hurley K AU - De Sa Santos MH AU - Hayes DN AU - Hakim JA AU - Guasch A AU - Co ACG AU - Grega M AU - Santanna JG AU - De Aquino Goulart MA AU - Giglio R AU - Gholipour M AU - Garzinodemo P AU - Gangemi M AU - Villefort RF AU - Figueira FF AU - Fiano V AU - Fervers B AU - Fernandes GA AU - Escallon A AU - Durant LC AU - De Souza ED AU - Dias TC AU - Cuffini C AU - Creaney G AU - Costa I AU - Clavero O AU - Chundriger Q AU - Chopard P AU - Chiusa L AU - Carvalho AL AU - Carvalho RS AU - Cantor E AU - Cabanas ML AU - Burtica C AU - Brentisci C AU - Brenner N AU - Brenes J AU - Bouvard L AU - Botta MG AU - Zimmermann JB AU - Rodrigues NB AU - Bernal P AU - Berenstein B AU - Beraldi B AU - Daniel CB AU - Baldionelorza AM AU - Avondet L AU - Avello Y AU - Arguello L AU - Arantes PE AU - Anwar N AU - Pavon MA AU - Alwaheidi SF AU - Alibhai S AU - Agudo A AU - Adam R AU - Timpson N AU - Pinto LF AU - Mckay J AU - Virani S AU - Dudding T TI - Cross-Ancestral Gwas Identifies 29 Variants Across Head and Neck Cancer Subsites JO - Nature Communications VL - 16 IS - 1 SP - EP - PY - 2025 ER -

Style

Citing Format

MLA

Ebrahimi E, et al.. "Cross-Ancestral Gwas Identifies 29 Variants Across Head and Neck Cancer Subsites." Nature Communications, vol. 16, no. 1, 2025, pp. -.

APA

Ebrahimi E, Sangphukieo A, Park HA, Gaborieau V, Ferreiroiglesias A, Diergaarde B, Ahrens W, Alemany L, Arantes LMRB, Betka J, Bratman SV, Canova C, Conlon MSC, Conway DI, Cuello M, Curado MP, De Carvalho AC, De Oliviera JC, Gormley M, ... Dudding T (2025). Cross-Ancestral Gwas Identifies 29 Variants Across Head and Neck Cancer Subsites. Nature Communications, 16(1), -.

Chicago

Ebrahimi E, Sangphukieo A, Park HA, Gaborieau V, Ferreiroiglesias A, Diergaarde B, Ahrens W, et al.. "Cross-Ancestral Gwas Identifies 29 Variants Across Head and Neck Cancer Subsites." Nature Communications 16, no. 1 (2025): -.

Harvard

Ebrahimi E et al. (2025) 'Cross-Ancestral Gwas Identifies 29 Variants Across Head and Neck Cancer Subsites', Nature Communications, 16(1), pp. -.

Vancouver

Ebrahimi E, Sangphukieo A, Park HA, Gaborieau V, Ferreiroiglesias A, Diergaarde B, et al.. Cross-Ancestral Gwas Identifies 29 Variants Across Head and Neck Cancer Subsites. Nature Communications. 2025;16(1):-.

BibTex

@article{ author = {Ebrahimi E and Sangphukieo A and Park HA and Gaborieau V and Ferreiroiglesias A and Diergaarde B and Ahrens W and Alemany L and Arantes LMRB and Betka J and Bratman SV and Canova C and Conlon MSC and Conway DI and Cuello M and Curado MP and De Carvalho AC and De Oliviera JC and Gormley M and Hadji M and Hargreaves S and Healy CM and Holcatova I and Hung RJ and Kowalski LP and Lagiou P and Lagiou A and Liu G and Macfarlane GJ and Olshan AF and Perdomo Velasquez S and Pinto LFR and De Podesta JRV and Polesel J and Pring M and Rashidian H and Gama RR and Richiardi L and Robinson M and Rodriguez Urrego PA and Santi SA and Saunders DP and Soareslima SC and Timpson N and Vilensky M and Von Zeidler SV and Waterboer T and Zendehdel K and Znaor A and Brennan P and Wright S and Whitmarsh A and Valenzuela A and Ucross G and Tous S and Torres O and Thomas S and Stura A and De Oliveira JS and Sosa C and Sorroche BP and Smart S and Siefer O and Sharma SJ and Serrano R and Sena A and Segovia J and Scapultamponeto C and Santivanez JJ and Saintigny P and Ali TS and Roux PE and Ross A and Rodriguez MI and Rodriguez I and Rodilla F and Riva G and Ricardi U and Renard H and Reis RM and Rego JNI and Rasul S and Ramieri G and Prager KM and Prado CP and Poveda A and Popovic M and Pomata A and Pervez S and Perol O and Pereira DM and Pecorari G and Casabona SP and Paterson C and Palau M and Ostellino O and Ospina V and Osorio M and Ortiz J and Ortiz H and De Oliveira JC and Oliva M and Neves AB and Ness A and Munoz A and Cortes FM and Montealegrepaez AL and Mongelos P and Moccia C and Mineiro MS and Michels B and Meza L and Mendoza L and Mendonca EF and Mena C and Mcmahon AD and Mccaul J and Marzban M and De Abreu PM and Manos M and Rocha RM and Zorzaneli WM and Gonzalez IL and Dias FL and Lenzi J and Legal E and Klumann JP and Kana M and Johannsen J and Siddiqui MI and Iorio GC and Insfran M and Hurley K and De Sa Santos MH and Hayes DN and Hakim JA and Guasch A and Co ACG and Grega M and Santanna JG and De Aquino Goulart MA and Giglio R and Gholipour M and Garzinodemo P and Gangemi M and Villefort RF and Figueira FF and Fiano V and Fervers B and Fernandes GA and Escallon A and Durant LC and De Souza ED and Dias TC and Cuffini C and Creaney G and Costa I and Clavero O and Chundriger Q and Chopard P and Chiusa L and Carvalho AL and Carvalho RS and Cantor E and Cabanas ML and Burtica C and Brentisci C and Brenner N and Brenes J and Bouvard L and Botta MG and Zimmermann JB and Rodrigues NB and Bernal P and Berenstein B and Beraldi B and Daniel CB and Baldionelorza AM and Avondet L and Avello Y and Arguello L and Arantes PE and Anwar N and Pavon MA and Alwaheidi SF and Alibhai S and Agudo A and Adam R and Timpson N and Pinto LF and Mckay J and Virani S and Dudding T}, title = {Cross-Ancestral Gwas Identifies 29 Variants Across Head and Neck Cancer Subsites}, journal = {Nature Communications}, volume = {16}, number = {1}, pages = {-}, year = {2025} }

RIS

TY - JOUR
AU - Ebrahimi E
AU - Sangphukieo A
AU - Park HA
AU - Gaborieau V
AU - Ferreiroiglesias A
AU - Diergaarde B
AU - Ahrens W
AU - Alemany L
AU - Arantes LMRB
AU - Betka J
AU - Bratman SV
AU - Canova C
AU - Conlon MSC
AU - Conway DI
AU - Cuello M
AU - Curado MP
AU - De Carvalho AC
AU - De Oliviera JC
AU - Gormley M
AU - Hadji M
AU - Hargreaves S
AU - Healy CM
AU - Holcatova I
AU - Hung RJ
AU - Kowalski LP
AU - Lagiou P
AU - Lagiou A
AU - Liu G
AU - Macfarlane GJ
AU - Olshan AF
AU - Perdomo Velasquez S
AU - Pinto LFR
AU - De Podesta JRV
AU - Polesel J
AU - Pring M
AU - Rashidian H
AU - Gama RR
AU - Richiardi L
AU - Robinson M
AU - Rodriguez Urrego PA
AU - Santi SA
AU - Saunders DP
AU - Soareslima SC
AU - Timpson N
AU - Vilensky M
AU - Von Zeidler SV
AU - Waterboer T
AU - Zendehdel K
AU - Znaor A
AU - Brennan P
AU - Wright S
AU - Whitmarsh A
AU - Valenzuela A
AU - Ucross G
AU - Tous S
AU - Torres O
AU - Thomas S
AU - Stura A
AU - De Oliveira JS
AU - Sosa C
AU - Sorroche BP
AU - Smart S
AU - Siefer O
AU - Sharma SJ
AU - Serrano R
AU - Sena A
AU - Segovia J
AU - Scapultamponeto C
AU - Santivanez JJ
AU - Saintigny P
AU - Ali TS
AU - Roux PE
AU - Ross A
AU - Rodriguez MI
AU - Rodriguez I
AU - Rodilla F
AU - Riva G
AU - Ricardi U
AU - Renard H
AU - Reis RM
AU - Rego JNI
AU - Rasul S
AU - Ramieri G
AU - Prager KM
AU - Prado CP
AU - Poveda A
AU - Popovic M
AU - Pomata A
AU - Pervez S
AU - Perol O
AU - Pereira DM
AU - Pecorari G
AU - Casabona SP
AU - Paterson C
AU - Palau M
AU - Ostellino O
AU - Ospina V
AU - Osorio M
AU - Ortiz J
AU - Ortiz H
AU - De Oliveira JC
AU - Oliva M
AU - Neves AB
AU - Ness A
AU - Munoz A
AU - Cortes FM
AU - Montealegrepaez AL
AU - Mongelos P
AU - Moccia C
AU - Mineiro MS
AU - Michels B
AU - Meza L
AU - Mendoza L
AU - Mendonca EF
AU - Mena C
AU - Mcmahon AD
AU - Mccaul J
AU - Marzban M
AU - De Abreu PM
AU - Manos M
AU - Rocha RM
AU - Zorzaneli WM
AU - Gonzalez IL
AU - Dias FL
AU - Lenzi J
AU - Legal E
AU - Klumann JP
AU - Kana M
AU - Johannsen J
AU - Siddiqui MI
AU - Iorio GC
AU - Insfran M
AU - Hurley K
AU - De Sa Santos MH
AU - Hayes DN
AU - Hakim JA
AU - Guasch A
AU - Co ACG
AU - Grega M
AU - Santanna JG
AU - De Aquino Goulart MA
AU - Giglio R
AU - Gholipour M
AU - Garzinodemo P
AU - Gangemi M
AU - Villefort RF
AU - Figueira FF
AU - Fiano V
AU - Fervers B
AU - Fernandes GA
AU - Escallon A
AU - Durant LC
AU - De Souza ED
AU - Dias TC
AU - Cuffini C
AU - Creaney G
AU - Costa I
AU - Clavero O
AU - Chundriger Q
AU - Chopard P
AU - Chiusa L
AU - Carvalho AL
AU - Carvalho RS
AU - Cantor E
AU - Cabanas ML
AU - Burtica C
AU - Brentisci C
AU - Brenner N
AU - Brenes J
AU - Bouvard L
AU - Botta MG
AU - Zimmermann JB
AU - Rodrigues NB
AU - Bernal P
AU - Berenstein B
AU - Beraldi B
AU - Daniel CB
AU - Baldionelorza AM
AU - Avondet L
AU - Avello Y
AU - Arguello L
AU - Arantes PE
AU - Anwar N
AU - Pavon MA
AU - Alwaheidi SF
AU - Alibhai S
AU - Agudo A
AU - Adam R
AU - Timpson N
AU - Pinto LF
AU - Mckay J
AU - Virani S
AU - Dudding T
TI - Cross-Ancestral Gwas Identifies 29 Variants Across Head and Neck Cancer Subsites
JO - Nature Communications
VL - 16
IS - 1
SP -
EP -
PY - 2025
ER -

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