Genomic Resources for Wild Populations of the House Mouse, Mus Musculus and Its Close Relative Mus Spretus

Genomic Resources for Wild Populations of the House Mouse, Mus Musculus and Its Close Relative Mus Spretus Publisher Pubmed

Harr B¹ ; Karakoc E^{1, 8} ; Neme R^{1, 9} ; Teschke M^{1, 10} ; Pfeifle C¹ ; Pezer Z^{1, 11} ; Babiker H¹ ; Linnenbrink M¹ ; Montero I^{1, 12} ; Scavetta R^{1, 13} ; Abai MR² ; Molins MP³ ; Schlegel M^{4, 14} ; Ulrich RG⁴ Show All Authors

Harr B¹
Karakoc E^{1, 8}
Neme R^{1, 9}
Teschke M^{1, 10}
Pfeifle C¹
Pezer Z^{1, 11}
Babiker H¹
Linnenbrink M¹
Montero I^{1, 12}
Scavetta R^{1, 13}
Abai MR²
Molins MP³
Schlegel M^{4, 14}
Ulrich RG⁴
Altmuller J^{5, 6}
Franitza M^{5, 7}
Buntge A^{1, 15}
Kunzel S¹
Tautz D¹

Show Affiliations

1. Max-Planck Institute for Evolutionary Biology, August-Thienemanstrasse 2, Plon, 24306, Germany
2. Department of Medical Entomology and Vector Control, School of Public Health, Tehran University of Medical Sciences, Tehran, 1417613151, Iran
3. Laboratorio de Anatomia Animal, Departamento de Biologia Animal, Facultad de Ciencias, Universidad de Vigo, Vigo, 36200, Spain
4. Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute for Novel and Emerging Infectious Diseases, Sudufer 10, Greifswald-Insel Riems, 17493, Germany
5. Cologne Center for Genomics (CCG), University of Cologne, Weyertal 115b, Cologne, 50931, Germany
6. Institute of Human Genetics, Universitatsklinik Koln, Kerpener Str. 34, Koln, 50931, Germany
7. Cologne Excellence Cluster on Cellular Stress Responses in Aging-Ass. Diseases (CECAD), University of Cologne, Joseph-Stelzmann-Str. 26, Cologne, 50931, Germany
8. Department of Computer Science and Engineering, Istanbul Medipol University, Istanbul, 34810, Turkey
9. Columbia University Medical Center, Department of Biochemistry and Molecular Biophysics, W 701 168th Street, New York, 10033, NY, United States
10. Deutsche Forschungsgemeinschaft, Bonn, 53170, Germany
11. Ruder Boskovic Institute, Zagreb, 10000, Croatia
12. Medical Faculty, Eberhard Karls Universitat Tubingen, Tubingen, Germany
13. Science Craft, Prinzessinnenstrasse 19-20, Berlin, 10969, Germany
14. Seramun Diagnostica GmbH, Heidesee, 15754, Germany
15. INVENZIO GmbH and Co KG, Regensburg, 93047, Germany

Source: Scientific Data Published:2016

Abstract

Wild populations of the house mouse (Mus musculus) represent the raw genetic material for the classical inbred strains in biomedical research and are a major model system for evolutionary biology. We provide whole genome sequencing data of individuals representing natural populations of M. m. domesticus (24 individuals from 3 populations), M. m. helgolandicus (3 individuals), M. m. musculus (22 individuals from 3 populations) and M. spretus (8 individuals from one population). We use a single pipeline to map and call variants for these individuals and also include 10 additional individuals of M. m. castaneus for which genomic data are publically available. In addition, RNAseq data were obtained from 10 tissues of up to eight adult individuals from each of the three M. m. domesticus populations for which genomic data were collected. Data and analyses are presented via tracks viewable in the UCSC or IGV genome browsers. We also provide information on available outbred stocks and instructions on how to keep them in the laboratory. © The Author(s) 2016.

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Style	Citing Format
MLA	Harr B, et al.. "Genomic Resources for Wild Populations of the House Mouse, Mus Musculus and Its Close Relative Mus Spretus." Scientific Data, vol. 3, no. , 2016, pp. -.
APA	Harr B, Karakoc E, Neme R, Teschke M, Pfeifle C, Pezer Z, Babiker H, Linnenbrink M, Montero I, Scavetta R, Abai MR, Molins MP, Schlegel M, Ulrich RG, Altmuller J, Franitza M, Buntge A, Kunzel S, Tautz D (2016). Genomic Resources for Wild Populations of the House Mouse, Mus Musculus and Its Close Relative Mus Spretus. Scientific Data, 3(), -.
Chicago	Harr B, Karakoc E, Neme R, Teschke M, Pfeifle C, Pezer Z, Babiker H, et al.. "Genomic Resources for Wild Populations of the House Mouse, Mus Musculus and Its Close Relative Mus Spretus." Scientific Data 3, no. (2016): -.
Harvard	Harr B et al. (2016) 'Genomic Resources for Wild Populations of the House Mouse, Mus Musculus and Its Close Relative Mus Spretus', Scientific Data, 3(), pp. -.
Vancouver	Harr B, Karakoc E, Neme R, Teschke M, Pfeifle C, Pezer Z, et al.. Genomic Resources for Wild Populations of the House Mouse, Mus Musculus and Its Close Relative Mus Spretus. Scientific Data. 2016;3():-.
BibTex	@article{ author = {Harr B and Karakoc E and Neme R and Teschke M and Pfeifle C and Pezer Z and Babiker H and Linnenbrink M and Montero I and Scavetta R and Abai MR and Molins MP and Schlegel M and Ulrich RG and Altmuller J and Franitza M and Buntge A and Kunzel S and Tautz D}, title = {Genomic Resources for Wild Populations of the House Mouse, Mus Musculus and Its Close Relative Mus Spretus}, journal = {Scientific Data}, volume = {3}, number = {}, pages = {-}, year = {2016} }
RIS	TY - JOUR AU - Harr B AU - Karakoc E AU - Neme R AU - Teschke M AU - Pfeifle C AU - Pezer Z AU - Babiker H AU - Linnenbrink M AU - Montero I AU - Scavetta R AU - Abai MR AU - Molins MP AU - Schlegel M AU - Ulrich RG AU - Altmuller J AU - Franitza M AU - Buntge A AU - Kunzel S AU - Tautz D TI - Genomic Resources for Wild Populations of the House Mouse, Mus Musculus and Its Close Relative Mus Spretus JO - Scientific Data VL - 3 IS - SP - EP - PY - 2016 ER -

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